Theories of Population Variation in Genes and Genomes

Front Cover
Princeton University Press, 2008 - Science - 421 pages

This textbook provides an authoritative introduction to both classical and coalescent approaches to population genetics. Written for graduate students and advanced undergraduates by one of the world's leading authorities in the field, the book focuses on the theoretical background of population genetics, while emphasizing the close interplay between theory and empiricism. Traditional topics such as genetic and phenotypic variation, mutation, migration, and linkage are covered and advanced by contemporary coalescent theory, which describes the genealogy of genes in a population, ultimately connecting them to a single common ancestor. Effects of selection, particularly genomic effects, are discussed with reference to molecular genetic variation. The book is designed for students of population genetics, bioinformatics, evolutionary biology, molecular evolution, and theoretical biology--as well as biologists, molecular biologists, breeders, biomathematicians, and biostatisticians.


  • Contains up-to-date treatment of key areas in classical and modern theoretical population genetics

  • Provides in-depth coverage of coalescent theory

  • Discusses genomic effects of selection

  • Gives examples from empirical population genetics

  • Incorporates figures, diagrams, and boxed features throughout

  • Includes end-of-chapter exercises

  • Speaks to a wide range of students in biology, bioinformatics, and biostatistics

From inside the book

Contents

Genetics
7
11 Genetic Variation
9
Conservation of Variation
21
21 Stochastic Fluctuations
23
22 WrightFisher Process
26
23 Gene Identity in a Finite Population
31
24 Coalescence of Genes
33
25 Characteristic Time Unit
41
65 Recombination and Physical Distance
177
Phenotypic Variation
181
71 Quantitative Inheritance
185
72 Kin Resemblance
188
73 Inference on the Genotypic Variance
195
74 Mapping of Quantitative Trait Loci
202
Variation and Selection
213
Effects of Selection
216

26 Diffusion Approximation
42
27 Morans Model
50
Diploid Populations
53
31 Random Mating
54
32 Effective Population Size
62
33 Genotypic Frequencies
69
Mutation and Variation
71
41 Mutation
72
42 The TwoAllele Model
77
43 Genealogy and Variation
84
44 Mutation and Coalescence
87
45 The Infinite Alleles Model
95
46 The Infinite Sites Model
100
47 Age of an Allele
104
48 Numerical Simulations
105
Migration
108
51 Population Genetics of Migration
109
52 Population Structure
118
53 Genotypic Proportions
133
Linkage
139
61 The Karyotype
141
62 Population Genetics of Linkage
148
63 Linkage Equilibrium
150
64 The Ancestral Recombination Graph
161
81 Selection Components
219
82 Viability Selection
222
83 Selection on a Quantitative Character
234
84 Mutation and Selection
245
85 Stability of an Equilibrium
248
86 The Coalescent and Selection
255
Genomic Effects of Selection
264
91 Multilocus Selection
268
92 Selection Experiments in Drosophila
279
93 Hitchhiking
285
94 Inbreeding Depression
291
95 Sweeps by Selection
301
Population Structure
309
101 Polymorphism
310
102 Introgression
320
103 Divergence of Populations
338
Probability Theory and Statistics
345
A2 Markov Chains
355
A3 Continuous Random Variables
359
Solutions to Exercises
363
Bibliography
383
Index
413
Copyright

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Page 410 - T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma...
Page 389 - The sampling theory of selectively neutral alleles.
Page 410 - Diemer, K., Muruganujan, A., Guo, N., Sato, S., Bafna, V., Istrail, S., Lippert, R., Schwartz, R., Walenz, B., Yooseph, S., Allen, D., Basu, A., Baxendale, J., Blick, L., Caminha, M., Carnes-Stine, J., Caulk, P., Chiang, YH, Coyne, M., Dahlke, C., Mays, A., Dombroski, M., Donnelly, M., Ely, D., Esparham, S., Fosler, C., Gire, H., Glanowski, S., Glasser, K., Glodek, A., Gorokhov, M., Graham, K., Gropman, B., Harris, M., Heil, J., Henderson, S., Hoover, J., Jennings, D., Jordan, C., Jordan, J., Kasha,...

About the author (2008)

Freddy Bugge Christiansen is professor of population biology at the University of Aarhus in Denmark. He is the author of Population Genetics of Multiple Loci and coauthor of Theories of Populations in Biological Communities and Population Genetics.

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